If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ), 'gf_id' => 'HOM05D000670', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000670' ), 'data_identifier' => 'HOM05D000670', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000670', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '853', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01190' => 'bna', 'A03p45160' => 'bna', 'A04p17240' => 'bna', 'A04p17250' => 'bna', 'A04p17280' => 'bna', 'A08p22900' => 'bna', 'A09p57290' => 'bna', 'A09p57310' => 'bna', 'A09p57330' => 'bna', 'Aa31LG11G5740' => 'aar', 'Aa31LG6G14750' => 'aar', 'Aa31LG6G14760' => 'aar', 'Aa31LG6G14770' => 'aar', 'Aa31LG7G14070' => 'aar', 'Aa31LG7G14080' => 'aar', 'Aa31LG7G14090' => 'aar', 'Aa31LG8G12680' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.966' => 'aag', 'Actinidia02421' => 'ach', 'Actinidia04410' => 'ach', 'Actinidia11940' => 'ach', 'Actinidia11941' => 'ach', 'Actinidia18855' => 'ach', 'Actinidia28011' => 'ach', 'Actinidia35163' => 'ach', 'Actinidia36394' => 'ach', 'Actinidia36395' => 'ach', 'Ah.01g024300' => 'amhyb', 'Ah.02g125540' => 'amhyb', 'Ah.02g129260' => 'amhyb', 'Ah.03g134450' => 'amhyb', 'Ah.03g134460' => 'amhyb', 'Ah.03g140320' => 'amhyb', 'AL4G12280' => 'aly', 'AL4G12290' => 'aly', 'AL4G12300' => 'aly', 'Aqoxy1G03785' => 'aox', 'Aqoxy439s001' => 'aox', 'Aqoxy6G00605' => 'aox', 'Aqoxy6G00606' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07ZIFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.093PIN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1NL7KX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2V7Q2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TH67S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5IZP5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QXC4B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.662K4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6A8S36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4ZY7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DRPT5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXN5ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH0TD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVT10G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IGZ079' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G2LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFV18T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JNTF40' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYG6WL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8539K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7IIZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P38CZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9YBBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP9JCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSVC5I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQH7P6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TWH29W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2ZUG7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1PT0Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3LKGW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3C6LT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD5CML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR3UX0' => 'arhy', 'AT2G22750' => 'ath', 'AT2G22760' => 'ath', 'AT2G22770' => 'ath', 'AT4G37850' => 'ath', 'ATR0767G060' => 'atr', 'Atru.chr3.1103' => 'acertr', 'Atru.chr3.1104' => 'acertr', 'Atru.chr3.1107' => 'acertr', 'Atru.chr3.1108' => 'acertr', 'Atru.chr3.1112' => 'acertr', 'Atru.chr3.1117' => 'acertr', 'Atru.chr3.1118' => 'acertr', 'Atru.chr6.1414' => 'acertr', 'AUR62004073' => 'cqu', 'AUR62004246' => 'cqu', 'AUR62004248' => 'cqu', 'AUR62005873' => 'cqu', 'AUR62005874' => 'cqu', 'AUR62005875' => 'cqu', 'AUR62005876' => 'cqu', 'AUR62005877' => 'cqu', 'AUR62010677' => 'cqu', 'AUR62011472' => 'cqu', 'AUR62014013' => 'cqu', 'AUR62017204' => 'cqu', 'AUR62017206' => 'cqu', 'AUR62026248' => 'cqu', 'AUR62026381' => 'cqu', 'AUR62027063' => 'cqu', 'AUR62027064' => 'cqu', 'AUR62030904' => 'cqu', 'AUR62030905' => 'cqu', 'AUR62032867' => 'cqu', 'AUR62032868' => 'cqu', 'AUR62032869' => 'cqu', 'AUR62032870' => 'cqu', 'BcaB03g12328' => 'bca', 'BcaB03g12329' => 'bca', 'BcaB06g27825' => 'bca', 'BcaB06g27828' => 'bca', 'BcaB06g27829' => 'bca', 'BcaB08g34552' => 'bca', 'BcaB08g35112' => 'bca', 'BcaB08g35115' => 'bca', 'BcaB08g35116' => 'bca', 'BcaB08g35119' => 'bca', 'BcaB08g35593' => 'bca', 'BcaB08g35595' => 'bca', 'BcaC01g00370' => 'bca', 'BcaC01g03100' => 'bca', 'BcaC02g08605' => 'bca', 'BcaC02g08606' => 'bca', 'BcaC02g08610' => 'bca', 'BcaC07g41035' => 'bca', 'BcaC07g41037' => 'bca', 'BcaC07g41039' => 'bca', 'BcaNung00968' => 'bca', 'BcaNung00970' => 'bca', 'BolC1t00131H' => 'bol', 'BolC3t17890H' => 'bol', 'BolC3t20140H' => 'bol', 'BolC4t26782H' => 'bol', 'BolC4t26783H' => 'bol', 'BolC8t51606H' => 'bol', 'BolC8t51608H' => 'bol', 'BolC8t51611H' => 'bol', 'BraA01t00117Z' => 'bra', 'BraA03t13651Z' => 'bra', 'BraA04t17352Z' => 'bra', 'BraA04t17353Z' => 'bra', 'BraA04t17356Z' => 'bra', 'BraA08t34252Z' => 'bra', 'BraA09t41122Z' => 'bra', 'BraA09t41124Z' => 'bra', 'C01p01350' => 'bna', 'C03p56030' => 'bna', 'C03p78980' => 'bna', 'C04p52060' => 'bna', 'C04p52080' => 'bna', 'C04p52090' => 'bna', 'C08p40370' => 'bna', 'C08p40400' => 'bna', 'C08p40420' => 'bna', 'CAN.G1061.11' => 'can', 'CAN.G1061.12' => 'can', 'CAN.G14.58' => 'can', 'CAN.G254.7' => 'can', 'CAN.G504.64' => 'can', 'CANSAT01G1206' => 'cansat', 'CANSAT01G1359' => 'cansat', 'CANSAT01G3219' => 'cansat', 'CANSAT25G2334' => 'cansat', 'CARHR114030' => 'chi', 'CARHR114040' => 'chi', 'CARHR114050' => 'chi', 'CARHR246240' => 'chi', 'Carub.0004s0188' => 'cru', 'Carub.0004s0189' => 'cru', 'Carub.0004s0190' => 'cru', 'Carub.0007s0237' => 'cru', 'Ca_00192_v3' => 'car', 'Ca_01030_v3' => 'car', 'Ca_01031_v3' => 'car', 'Ca_08027_v3' => 'car', 'Ca_18423_v3' => 'car', 'Ca_18438_v3' => 'car', 'Ca_22079_v3' => 'car', 'Ca_22080_v3' => 'car', 'Ca_22081_v3' => 'car', 'Ca_24654_v3' => 'car', 'Ca_24655_v3' => 'car', 'Ca_24656_v3' => 'car', 'Ca_26517_v3' => 'car', 'Cc00_g24080' => 'ccan', 'Cc02_g20420' => 'ccan', 'Cc02_g34000' => 'ccan', 'Cc02_g34020' => 'ccan', 'Cc02_g34040' => 'ccan', 'Cc02_g34050' => 'ccan', 'Cc02_g34060' => 'ccan', 'Cc02_g34070' => 'ccan', 'Cc02_g34090' => 'ccan', 'Cc02_g34100' => 'ccan', 'Cc06_g19210' => 'ccan', 'Cc06_g21690' => 'ccan', 'Cc07_g15720' => 'ccan', 'Cc08_g07600' => 'ccan', 'Cc10_g08760' => 'ccan', 'Cc10_g08770' => 'ccan', 'CDE07G1874' => 'cde', 'Cfa006807' => 'cfa', 'Cfa006808' => 'cfa', 'Ciclev10023770m.g' => 'ccl', 'Ciclev10027158m.g' => 'ccl', 'Ciclev10027504m.g' => 'ccl', 'Ciclev10028925m.g' => 'ccl', 'CiPaw.05G025200' => 'cil', 'CiPaw.06G161300' => 'cil', 'CiPaw.07G040800' => 'cil', 'CiPaw.07G041000' => 'cil', 'CiPaw.08G147200' => 'cil', 'CiPaw.08G147300' => 'cil', 'ClCG01G018040' => 'cla', 'ClCG01G018050' => 'cla', 'ClCG01G018060' => 'cla', 'ClCG02G007480' => 'cla', 'COL.COLO4_11658' => 'col', 'COL.COLO4_11659' => 'col', 'COL.COLO4_17839' => 'col', 'COL.COLO4_17840' => 'col', 'Cpa.g.c37783' => 'cpa', 'Cpa.g.sc129.37' => 'cpa', 'Cpa.g.sc129.38' => 'cpa', 'Cpa.g.sc20.63' => 'cpa', 'CsaV3_6G044560' => 'csa', 'CsaV3_6G044570' => 'csa', 'CsaV3_6G044580' => 'csa', 'CsaV3_7G007460' => 'csa', 'CSS0003258' => 'camsi', 'CSS0010699' => 'camsi', 'CSS0013536' => 'camsi', 'CSS0015224' => 'camsi', 'CSS0022228' => 'camsi', 'CSS0025440' => 'camsi', 'CSS0026432' => 'camsi', 'CSS0033065' => 'camsi', 'CSS0038366' => 'camsi', 'CSS0040443' => 'camsi', 'CSS0043636' => 'camsi', 'CSS0046630' => 'camsi', 'CSS0046949' => 'camsi', 'CSS0047674' => 'camsi', 'CSS0048260' => 'camsi', 'CSS0049230' => 'camsi', 'DCAR_001792' => 'dca', 'DCAR_010766' => 'dca', 'DCAR_010767' => 'dca', 'DCAR_010769' => 'dca', 'DCAR_010770' => 'dca', 'DCAR_021919' => 'dca', 'DCAR_025840' => 'dca', 'DCAR_025842' => 'dca', 'Dinv16045' => 'din', 'Dinv23075' => 'din', 'Dinv26986' => 'din', 'Dinv26987' => 'din', 'Dinv36999' => 'din', 'Duzib052G0020' => 'dzi', 'Duzib132G0333' => 'dzi', 'Duzib147G0694' => 'dzi', 'Duzib147G1159' => 'dzi', 'Duzib187G1614' => 'dzi', 'Duzib187G1813' => 'dzi', 'Duzib264G0164' => 'dzi', 'Duzib264G0241' => 'dzi', 'ECA232G2009' => 'eca', 'ECA232G4686' => 'eca', 'ECA236G4118' => 'eca', 'ECA238G2039' => 'eca', 'ECA238G2598' => 'eca', 'ECA240G2109' => 'eca', 'ECA246G4311' => 'eca', 'EL10Ac3g04978' => 'bvu', 'EL10Ac5g12669' => 'bvu', 'EL10Ac5g12945' => 'bvu', 'EL10Ac6g13290' => 'bvu', 'EL10Ac6g13291' => 'bvu', 'EL10Ac6g13292' => 'bvu', 'EL10Ac6g13293' => 'bvu', 'EL10Ac6g13294' => 'bvu', 'EL10Ac6g14580' => 'bvu', 'EL10Ac8g19291' => 'bvu', 'EL10Ac9g22142' => 'bvu', 'EL10Ac9g22143' => 'bvu', 'Eucgr.H02385' => 'egr', 'Eucgr.H02386' => 'egr', 'Eucgr.H02387' => 'egr', 'Eucgr.H02389' => 'egr', 'Eucgr.H02390' => 'egr', 'Eucgr.H02391' => 'egr', 'Eucgr.H02392' => 'egr', 'Eucgr.H02396' => 'egr', 'Eucgr.H02398' => 'egr', 'Eucgr.I00634' => 'egr', 'Eucgr.I02518' => 'egr', 'FAN15G2598' => 'fan', 'FAN19G0634' => 'fan', 'FAN19G2368' => 'fan', 'FAN20G0712' => 'fan', 'FAN23G2459' => 'fan', 'FAN24G2666' => 'fan', 'FAN26G1869' => 'fan', 'FAN26G3275' => 'fan', 'FAN27G3475' => 'fan', 'FAN28G0905' => 'fan', 'FAN28G3005' => 'fan', 'FvH4_1g18740' => 'fve', 'FvH4_1g18750' => 'fve', 'FvH4_2g02340' => 'fve', 'Glyma.01G197900' => 'gma', 'Glyma.01G198000' => 'gma', 'Glyma.01G198100' => 'gma', 'Glyma.03G105000' => 'gma', 'Glyma.03G105700' => 'gma', 'Glyma.05G110600' => 'gma', 'Glyma.05G110700' => 'gma', 'Glyma.05G110900' => 'gma', 'Glyma.07G027100' => 'gma', 'Glyma.07G027200' => 'gma', 'Glyma.07G027300' => 'gma', 'Glyma.07G027400' => 'gma', 'Glyma.07G116700' => 'gma', 'Glyma.07G117500' => 'gma', 'Glyma.07G117600' => 'gma', 'Glyma.07G185300' => 'gma', 'Glyma.08G063900' => 'gma', 'Glyma.08G215300' => 'gma', 'Glyma.08G215400' => 'gma', 'Glyma.08G215500' => 'gma', 'Glyma.08G215600' => 'gma', 'Glyma.09G246800' => 'gma', 'Glyma.09G246951' => 'gma', 'Glyma.11G043600' => 'gma', 'Glyma.11G043700' => 'gma', 'Glyma.13G253500' => 'gma', 'Glyma.13G368500' => 'gma', 'Glyma.13G368600' => 'gma', 'Glyma.13G368700' => 'gma', 'Glyma.15G005000' => 'gma', 'Glyma.15G005100' => 'gma', 'Glyma.15G061400' => 'gma', 'Glyma.17G155900' => 'gma', 'Glyma.17G156000' => 'gma', 'Glyma.17G156100' => 'gma', 'Glyma.18G246000' => 'gma', 'Glyma.18G246100' => 'gma', 'Glyma.18G246200' => 'gma', 'Gohir.A01G179100' => 'ghi', 'Gohir.A02G147300' => 'ghi', 'Gohir.A02G147400' => 'ghi', 'Gohir.A04G127900' => 'ghi', 'Gohir.A04G127906' => 'ghi', 'Gohir.A11G049600' => 'ghi', 'Gohir.A11G209900' => 'ghi', 'Gohir.A11G210100' => 'ghi', 'Gohir.A12G081800' => 'ghi', 'Gohir.D01G169900' => 'ghi', 'Gohir.D03G033000' => 'ghi', 'Gohir.D03G033100' => 'ghi', 'Gohir.D04G172520' => 'ghi', 'Gohir.D04G172560' => 'ghi', 'Gohir.D11G053101' => 'ghi', 'Gohir.D11G213000' => 'ghi', 'Gohir.D11G213100' => 'ghi', 'Gohir.D12G078800' => 'ghi', 'Gorai.002G211500' => 'gra', 'Gorai.003G034600' => 'gra', 'Gorai.003G034700' => 'gra', 'Gorai.007G057800' => 'gra', 'Gorai.007G228900' => 'gra', 'Gorai.007G229000' => 'gra', 'Gorai.008G087600' => 'gra', 'Gorai.012G161700' => 'gra', 'Gorai.012G161900' => 'gra', 'GSVIVG01002668001' => 'vvi', 'GSVIVG01002833001' => 'vvi', 'GSVIVG01003697001' => 'vvi', 'GSVIVG01003698001' => 'vvi', 'GSVIVG01003699001' => 'vvi', 'GSVIVG01003701001' => 'vvi', 'GSVIVG01004409001' => 'vvi', 'GSVIVG01006588001' => 'vvi', 'GSVIVG01036959001' => 'vvi', 'HanXRQChr03g0075891' => 'han', 'HanXRQChr07g0189031' => 'han', 'HanXRQChr07g0192751' => 'han', 'HanXRQChr07g0192771' => 'han', 'HanXRQChr07g0203801' => 'han', 'HanXRQChr07g0203821' => 'han', 'HanXRQChr08g0227161' => 'han', 'HanXRQChr10g0291281' => 'han', 'HanXRQChr11g0324061' => 'han', 'HanXRQChr11g0324071' => 'han', 'HanXRQChr11g0324081' => 'han', 'HanXRQChr11g0324091' => 'han', 'HanXRQChr11g0324101' => 'han', 'HanXRQChr11g0324111' => 'han', 'HanXRQChr11g0324121' => 'han', 'HanXRQChr12g0371921' => 'han', 'HanXRQChr14g0447571' => 'han', 'HanXRQChr14g0447591' => 'han', 'HanXRQChr16g0509371' => 'han', 'Haze_03951' => 'cav', 'Haze_03952' => 'cav', 'Haze_10360' => 'cav', 'Hma1.2p1_0435F.1_g152470' => 'hma', 'Hma1.2p1_0723F.1_g208810' => 'hma', 'Hma1.2p1_0723F.1_g208820' => 'hma', 'Hma1.2p1_1204F.1_g266980' => 'hma', 'HPP92_000902' => 'vpl', 'HPP92_007719' => 'vpl', 'HPP92_020619' => 'vpl', 'HPP92_024959' => 'vpl', 'HPP92_024965' => 'vpl', 'HPP92_024966' => 'vpl', 'Hund00406' => 'sun', 'Hund06488' => 'sun', 'Hund10921' => 'sun', 'Hund14160' => 'sun', 'Hund14161' => 'sun', 'Hund16606' => 'sun', 'Hund23204' => 'sun', 'Lalb_Chr01g0012221' => 'lal', 'Lalb_Chr04g0262261' => 'lal', 'Lalb_Chr05g0213921' => 'lal', 'Lalb_Chr05g0213931' => 'lal', 'Lalb_Chr05g0220491' => 'lal', 'Lalb_Chr05g0220501' => 'lal', 'Lalb_Chr09g0323821' => 'lal', 'Lalb_Chr09g0327051' => 'lal', 'Lalb_Chr09g0329411' => 'lal', 'Lalb_Chr14g0373951' => 'lal', 'Lalb_Chr14g0373961' => 'lal', 'Lalb_Chr14g0373971' => 'lal', 'Lalb_Chr15g0090231' => 'lal', 'Lalb_Chr16g0385951' => 'lal', 'Lalb_Chr16g0385961' => 'lal', 'Lalb_Chr22g0350721' => 'lal', 'Lalb_Chr24g0395361' => 'lal', 'Lalb_Chr25g0279151' => 'lal', 'Lalb_Chr25g0279161' => 'lal', 'Lj1g0022554' => 'lja', 'Lj2A426T40' => 'lonja', 'Lj2g0002533' => 'lja', 'Lj2g0011379' => 'lja', 'Lj2g0013602' => 'lja', 'Lj2g0016227' => 'lja', 'Lj2g0021190' => 'lja', 'Lj2g0024101' => 'lja', 'Lj2P426T37' => 'lonja', 'Lj3g0004595' => 'lja', 'Lj3g0006710' => 'lja', 'Lj3g0013175' => 'lja', 'Lj3g0020213' => 'lja', 'Lj3g0024272' => 'lja', 'Lj3g0027438' => 'lja', 'Lj4A171T48' => 'lonja', 'Lj4A171T49' => 'lonja', 'Lj4A172T19' => 'lonja', 'Lj4A172T20' => 'lonja', 'Lj4A173G11' => 'lonja', 'Lj4g0020467' => 'lja', 'Lj4g0022968' => 'lja', 'Lj4g0023024' => 'lja', 'Lj5g0005318' => 'lja', 'Lj5P224T39' => 'lonja', 'Lj6g0028057' => 'lja', 'Lj8P617T7' => 'lonja', 'Lj9A341T45' => 'lonja', 'Lj9P203T32' => 'lonja', 'Lsat_1_v5_gn_2_81721' => 'lsa', 'Lsat_1_v5_gn_2_81741' => 'lsa', 'Lsat_1_v5_gn_2_81801' => 'lsa', 'Lsat_1_v5_gn_3_84261' => 'lsa', 'Lsat_1_v5_gn_4_158841' => 'lsa', 'Lsat_1_v5_gn_4_158881' => 'lsa', 'Lsat_1_v5_gn_4_158921' => 'lsa', 'Lsat_1_v5_gn_5_110681' => 'lsa', 'Lsat_1_v5_gn_7_83480' => 'lsa', 'Lsat_1_v5_gn_9_114500' => 'lsa', 'Manes.07G048600' => 'mes', 'Manes.10G090800' => 'mes', 'Manes.12G119700' => 'mes', 'Manes.13G105700' => 'mes', 'Manes.13G105800' => 'mes', 'Mapoly0034s0053' => 'mpo', 'Mapoly0100s0033' => 'mpo', 'MBI16_g14666_MAGBIO' => 'mbi', 'MBI16_g33602_MAGBIO' => 'mbi', 'MBI16_g33604_MAGBIO' => 'mbi', 'MBI16_g35808_MAGBIO' => 'mbi', 'MD00G1068800' => 'mdo', 'MD01G1047200' => 'mdo', 'MD01G1047400' => 'mdo', 'MD05G1113000' => 'mdo', 'MD10G1115500' => 'mdo', 'MD15G1305200' => 'mdo', 'MD16G1282500' => 'mdo', 'Medtr0011s0210' => 'mtr', 'Medtr0011s0260' => 'mtr', 'Medtr0246s0020' => 'mtr', 'Medtr0246s0050' => 'mtr', 'Medtr0250s0040' => 'mtr', 'Medtr2g010450' => 'mtr', 'Medtr2g104490' => 'mtr', 'Medtr2g104500' => 'mtr', 'Medtr2g104530' => 'mtr', 'Medtr2g104550' => 'mtr', 'Medtr2g104560' => 'mtr', 'Medtr2g104590' => 'mtr', 'Medtr2g104620' => 'mtr', 'Medtr2g104650' => 'mtr', 'Medtr4g009110' => 'mtr', 'Medtr4g009420' => 'mtr', 'Medtr4g009510' => 'mtr', 'Medtr4g009540' => 'mtr', 'Medtr4g066380' => 'mtr', 'Medtr4g066460' => 'mtr', 'Medtr4g067010' => 'mtr', 'Medtr4g092700' => 'mtr', 'Medtr4g097920' => 'mtr', 'Medtr4g097940' => 'mtr', 'Medtr4g097950' => 'mtr', 'Medtr4g098035' => 'mtr', 'Medtr5g014520' => 'mtr', 'Medtr5g014550' => 'mtr', 'Medtr5g014560' => 'mtr', 'Medtr5g014600' => 'mtr', 'Medtr5g014640' => 'mtr', 'Medtr5g058600' => 'mtr', 'Medtr6g047550' => 'mtr', 'Medtr6g047570' => 'mtr', 'Medtr7g050350' => 'mtr', 'Medtr7g080780' => 'mtr', 'Medtr7g451650' => 'mtr', 'Medtr8g009010' => 'mtr', 'Medtr8g009020' => 'mtr', 'Medtr8g069740' => 'mtr', 'MELO3C007678.2' => 'cme', 'MELO3C007679.2' => 'cme', 'MELO3C007680.2' => 'cme', 'MELO3C018555.2' => 'cme', 'Migut.B00503' => 'egut', 'Migut.C01371' => 'egut', 'Migut.N01113' => 'egut', 'MSTRG.20244' => 'ama', 'MSTRG.23634' => 'ama', 'MSTRG.23636' => 'ama', 'MSTRG.23637' => 'ama', 'MSTRG.23638' => 'ama', 'MSTRG.23639' => 'ama', 'MSTRG.3497' => 'ama', 'MSTRG.3498' => 'ama', 'MSTRG.3499' => 'ama', 'MSTRG.3508' => 'ama', 'MSTRG.5301' => 'ama', 'Nitab4.5_0000093g0090' => 'nta', 'Nitab4.5_0000093g0100' => 'nta', 'Nitab4.5_0000093g0110' => 'nta', 'Nitab4.5_0000093g0170' => 'nta', 'Nitab4.5_0000396g0150' => 'nta', 'Nitab4.5_0000396g0170' => 'nta', 'Nitab4.5_0000396g0180' => 'nta', 'Nitab4.5_0000396g0230' => 'nta', 'Nitab4.5_0000528g0010' => 'nta', 'Nitab4.5_0000672g0150' => 'nta', 'Nitab4.5_0001155g0090' => 'nta', 'Nitab4.5_0001477g0190' => 'nta', 'Nitab4.5_0002654g0020' => 'nta', 'Nitab4.5_0002654g0050' => 'nta', 'Nitab4.5_0003510g0070' => 'nta', 'Nitab4.5_0003510g0090' => 'nta', 'Nitab4.5_0003642g0060' => 'nta', 'Nitab4.5_0005609g0070' => 'nta', 'Nn2g12915' => 'nnu', 'Nn2g13980' => 'nnu', 'Nn5g28510' => 'nnu', 'Nn5g29131' => 'nnu', 'Oeu005737.2' => 'oeu', 'Oeu013907.1' => 'oeu', 'Oeu014214.1' => 'oeu', 'Oeu014272.1' => 'oeu', 'Oeu025236.1' => 'oeu', 'Oeu030827.1' => 'oeu', 'Oeu030828.1' => 'oeu', 'Oeu045651.2' => 'oeu', 'Oeu050396.1' => 'oeu', 'Oeu050968.1' => 'oeu', 'Oeu050971.1' => 'oeu', 'Oeu051770.1' => 'oeu', 'Oeu059807.2' => 'oeu', 'Oeu059809.2' => 'oeu', 'Oeu061820.1' => 'oeu', 'Os03g0229100' => 'osa', 'Os03g0671000' => 'osa', 'Os03g0671800' => 'osa', 'Os03g0725800' => 'osa', 'Os10g0104300' => 'osa', 'Os12g0632600' => 'osa', 'Peaxi162Scf00065g01127' => 'pax', 'Peaxi162Scf00078g00546' => 'pax', 'Peaxi162Scf00096g00126' => 'pax', 'Peaxi162Scf00148g00161' => 'pax', 'Peaxi162Scf00216g00001' => 'pax', 'Peaxi162Scf00216g00008' => 'pax', 'Peaxi162Scf00216g00012' => 'pax', 'Peaxi162Scf00216g00116' => 'pax', 'Peaxi162Scf00216g00121' => 'pax', 'Peaxi162Scf00299g00345' => 'pax', 'Peaxi162Scf00380g00817' => 'pax', 'Peaxi162Scf00818g00526' => 'pax', 'Peaxi162Scf00818g00527' => 'pax', 'Peaxi162Scf00818g00528' => 'pax', 'Peaxi162Scf00818g00530' => 'pax', 'Peaxi162Scf00939g00006' => 'pax', 'Peaxi162Scf00939g00120' => 'pax', 'Peaxi162Scf00961g00117' => 'pax', 'PGR031G0064' => 'pgr', 'PGR102G0281' => 'pgr', 'PGR102G1531' => 'pgr', 'PGR102G1997' => 'pgr', 'PGR142G2876' => 'pgr', 'PGSC0003DMG400005101' => 'stu', 'PGSC0003DMG400012969' => 'stu', 'PGSC0003DMG400030622' => 'stu', 'PGSC0003DMG400030623' => 'stu', 'PGSC0003DMG402030621' => 'stu', 'Phvul.002G007400' => 'pvu', 'Phvul.002G007500' => 'pvu', 'Phvul.002G216700' => 'pvu', 'Phvul.003G231000' => 'pvu', 'Phvul.003G231100' => 'pvu', 'Phvul.003G231200' => 'pvu', 'Phvul.005G181300' => 'pvu', 'Phvul.005G181400' => 'pvu', 'Phvul.006G198400' => 'pvu', 'Phvul.008G050850' => 'pvu', 'Phvul.008G050901' => 'pvu', 'Phvul.008G050951' => 'pvu', 'Phvul.010G042700' => 'pvu', 'Phvul.010G043200' => 'pvu', 'Phvul.010G043300' => 'pvu', 'Phvul.010G043400' => 'pvu', 'Phvul.010G158200' => 'pvu', 'Phvul.010G158300' => 'pvu', 'Phvul.010G158400' => 'pvu', 'Phvul.010G158500' => 'pvu', 'Phvul.010G158600' => 'pvu', 'Potri.001G287200' => 'ptr', 'Potri.005G095250' => 'ptr', 'Potri.007G009400' => 'ptr', 'Potri.009G081400' => 'ptr', 'Pp3c11_21970' => 'ppa', 'Pp3c7_7950' => 'ppa', 'Prupe.6G211900' => 'ppe', 'Prupe.6G212000' => 'ppe', 'Prupe.8G157500' => 'ppe', 'Psat0s4073g0040' => 'psa', 'Psat0s469g0040' => 'psa', 'Psat0s469g0080' => 'psa', 'Psat0s843g0040' => 'psa', 'Psat0s843g0080' => 'psa', 'Psat1g212320' => 'psa', 'Psat2g172960' => 'psa', 'Psat2g173000' => 'psa', 'Psat3g104640' => 'psa', 'Psat4g079520' => 'psa', 'Psat4g079600' => 'psa', 'Psat4g079640' => 'psa', 'Psat4g079680' => 'psa', 'Psat4g079760' => 'psa', 'Psat4g221920' => 'psa', 'Psat4g221960' => 'psa', 'Psat4g222040' => 'psa', 'Psat7g104240' => 'psa', 'Psat7g258120' => 'psa', 'Psat7g258160' => 'psa', 'Psat7g258200' => 'psa', 'Psat7g258240' => 'psa', 'Psat7g258400' => 'psa', 'PSO210G4701' => 'pso', 'PSO384G5097' => 'pso', 'PSO541G3917' => 'pso', 'PSO541G4608' => 'pso', 'PSO675G0338' => 'pso', 'PSO675G4515' => 'pso', 'PSO724G0019' => 'pso', 'PSO724G0233' => 'pso', 'PSO761G0147' => 'pso', 'PSO782G5187' => 'pso', 'QL06p037875' => 'qlo', 'QL06p037911' => 'qlo', 'QL11p027110' => 'qlo', 'RcHm_v2.0_Chr2g0109611' => 'rch', 'RcHm_v2.0_Chr2g0109621' => 'rch', 'RcHm_v2.0_Chr6g0246251' => 'rch', 'Rhsim04G0084700' => 'rsi', 'Rhsim05G0094500' => 'rsi', 'Rhsim08G0088800' => 'rsi', 'Rhsim10G0085200' => 'rsi', 'Rhsim11G0145400' => 'rsi', 'Sabra07G0007200' => 'sbr', 'Sabra09G0063100' => 'sbr', 'Sabra16G0179700' => 'sbr', 'SalBow6G0775' => 'sbo', 'SalBow6G1225' => 'sbo', 'SalBow6G4341' => 'sbo', 'SalBow7G2049' => 'sbo', 'SalBow7G4691' => 'sbo', 'Sc07g0000300' => 'sci', 'Sc16g0000830' => 'sci', 'Sc18g0007280' => 'sci', 'Sed0000153' => 'sed', 'Sed0002307' => 'sed', 'Sed0005701' => 'sed', 'Sed0017851' => 'sed', 'Sed0019506' => 'sed', 'Sed0024556' => 'sed', 'SEGI_08608' => 'sgi', 'SEGI_10070' => 'sgi', 'SEGI_18379' => 'sgi', 'SEGI_39355' => 'sgi', 'SGA_v2.0_scaffold118G32604' => 'sas', 'SGA_v2.0_scaffold121G33101' => 'sas', 'SGA_v2.0_scaffold121G33103' => 'sas', 'SGA_v2.0_scaffold13G06402' => 'sas', 'SGA_v2.0_scaffold149G36543' => 'sas', 'SGA_v2.0_scaffold149G36545' => 'sas', 'SGA_v2.0_scaffold149G36552' => 'sas', 'SGA_v2.0_scaffold149G36556' => 'sas', 'SGA_v2.0_scaffold149G36560' => 'sas', 'SGA_v2.0_scaffold159G37604' => 'sas', 'SGA_v2.0_scaffold174G39230' => 'sas', 'SGA_v2.0_scaffold219G42550' => 'sas', 'SGA_v2.0_scaffold24G10639' => 'sas', 'SGA_v2.0_scaffold32G12962' => 'sas', 'SGA_v2.0_scaffold342G49420' => 'sas', 'SGA_v2.0_scaffold8G04446' => 'sas', 'SMO147G0142' => 'smo', 'Solyc01g106460.4' => 'sly', 'Solyc02g091800.4' => 'sly', 'Solyc02g091810.2' => 'sly', 'Solyc02g091820.3' => 'sly', 'Solyc05g009640.4' => 'sly', 'Solyc06g064580.2' => 'sly', 'Solyc06g064590.3' => 'sly', 'Sopen01g048830' => 'spe', 'Sopen02g036380' => 'spe', 'Sopen02g036390' => 'spe', 'Sopen02g036400' => 'spe', 'Sopen05g005450' => 'spe', 'Sopen06g023060' => 'spe', 'Sopen06g023070' => 'spe', 'Sp3g27680' => 'spa', 'Sp4g01740' => 'spa', 'Sp4g01750' => 'spa', 'Sp4g01760' => 'spa', 'Sp7g35490' => 'spa', 'TAR376G0520' => 'tar', 'TAR376G1109' => 'tar', 'TAR376G1164' => 'tar', 'TAR381G1653' => 'tar', 'TAR381G1681' => 'tar', 'TAR625G0050' => 'tar', 'TAR625G0194' => 'tar', 'TAR625G1117' => 'tar', 'TAR628G0521' => 'tar', 'THA.LOC104807648' => 'tha', 'THA.LOC104807649' => 'tha', 'THA.LOC104807858' => 'tha', 'THA.LOC104820171' => 'tha', 'THA.LOC104824952' => 'tha', 'Thecc.01G081300' => 'tca', 'Thecc.01G081400' => 'tca', 'Thecc.02G035300' => 'tca', 'Thhalv10000251m.g' => 'esa', 'Thhalv10000426m.g' => 'esa', 'Thhalv10000494m.g' => 'esa', 'Thhalv10025715m.g' => 'esa', 'TPR.G16885' => 'tpr', 'TPR.G17435' => 'tpr', 'TPR.G19144' => 'tpr', 'TPR.G19155' => 'tpr', 'TPR.G19162' => 'tpr', 'TPR.G22418' => 'tpr', 'TPR.G22421' => 'tpr', 'TPR.G22422' => 'tpr', 'TPR.G22424' => 'tpr', 'TPR.G22425' => 'tpr', 'TPR.G22428' => 'tpr', 'TPR.G22430' => 'tpr', 'TPR.G22722' => 'tpr', 'TPR.G26013' => 'tpr', 'TPR.G26014' => 'tpr', 'TPR.G27495' => 'tpr', 'TPR.G27498' => 'tpr', 'TPR.G27499' => 'tpr', 'TPR.G28211' => 'tpr', 'TPR.G32163' => 'tpr', 'TPR.G36432' => 'tpr', 'TPR.G38701' => 'tpr', 'TPR.G7483' => 'tpr', 'TWI14G0177' => 'twi', 'TWI53G0630' => 'twi', 'TWI53G1959' => 'twi', 'TWI59G0726' => 'twi', 'unitig_0.g487' => 'ugi', 'unitig_0.g489' => 'ugi', 'unitig_32.g10646' => 'ugi', 'unitig_32.g11879' => 'ugi', 'unitig_736.g22614' => 'ugi', 'unitig_748.g8743' => 'ugi', 'unitig_748.g8744' => 'ugi', 'vmacro01912' => 'vma', 'vmacro05437' => 'vma', 'vmacro19584' => 'vma', 'vmacro22433' => 'vma', 'vmacro22434' => 'vma', 'vmacro23433' => 'vma', 'vmacro23434' => 'vma', 'VMungo0251G3119' => 'vmu', 'VMungo0251G3300' => 'vmu', 'VMungo0251G3465' => 'vmu', 'VMungo0251G3790' => 'vmu', 'VMungo0331G0488' => 'vmu', 'VMungo0331G0530' => 'vmu', 'VMungo0331G0909' => 'vmu', 'VMungo0331G1110' => 'vmu', 'VMungo0331G1794' => 'vmu', 'VMungo1080G0413' => 'vmu', 'VMungo1080G1392' => 'vmu', 'VMungo1215G1273' => 'vmu', 'VMungo1321G0001' => 'vmu', 'VMungo1383G0180' => 'vmu', 'Zm00001eb002370' => 'zma', 'Zm00001eb009610' => 'zma', 'Zm00001eb009630' => 'zma', 'Zm00001eb025850' => 'zma', 'Zm00001eb032670' => 'zma', 'Zm00001eb032680' => 'zma', 'Zm00001eb052150' => 'zma', 'Zm00001eb052200' => 'zma', 'Zm00001eb052210' => 'zma', 'Zm00001eb055830' => 'zma', 'Zm00001eb082180' => 'zma', 'Zm00001eb215740' => 'zma', 'Zm00001eb295410' => 'zma', 'Zm00001eb417570' => 'zma', 'Zm00001eb422960' => 'zma', 'Zm00001eb427980' => 'zma' ) $gf_id = 'HOM05D000670' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000670' ) $data_identifier = 'HOM05D000670' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 3, 'aox' => (int) 4, 'arhy' => (int) 33, 'ath' => (int) 4, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 23, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 13, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 12, 'egr' => (int) 11, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 38, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 9, 'han' => (int) 19, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lja' => (int) 18, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 7, 'mtr' => (int) 40, 'cme' => (int) 4, 'egut' => (int) 3, 'ama' => (int) 11, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 15, 'osa' => (int) 6, 'pax' => (int) 18, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 21, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 23, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 3, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 16, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 23, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 14, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427980' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1